Sorry, could you give more infos? Shouldn't you just be able to update it normally?
You could also download the .zip file (are those availabe for windows-patches?) and extract it into your UT2k4 directory (that how it is done on Linux).
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The Linux version needs 3339 installed AFTER the Editors' Choice Bonus Pack, since it fixes issues in the BP. If you install the Bonus Pack after 3339, you'll break your installation...in such a case, just reinstall 3339 over top of it. You must apply 3339 after the Bonus Pack. The Editors' Choice Edition disc (on sale now!) installs the Bonus Pack by default, so you can just drop 3339 on top of that without fussing.
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You could also download the .zip file (are those availabe for windows-patches?) and extract it into your UT2k4 directory (that how it is done on Linux).
The Linux version needs 3339 installed AFTER the Editors' Choice Bonus Pack, since it fixes issues in the BP. If you install the Bonus Pack after 3339, you'll break your installation...in such a case, just reinstall 3339 over top of it. You must apply 3339 after the Bonus Pack. The Editors' Choice Edition disc (on sale now!) installs the Bonus Pack by default, so you can just drop 3339 on top of that without fussing.
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Should be the same for the windows version