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Is it possible to bake multiple hi polys down to a single lo poly in Marmoset?

I'm experimenting with photogammetry. I have made several hi poly scans of landscape. I can bake down needed information from the hi poly to a lot poly but in order to get the look I want I need merge the low poly meshes into a single mesh. 

Ssao makes the seams between meshes extremely apparent and I'd like to be able to bake the information from the several hi poly meshes down into the merged single lo poly mesh. 

Can marmoset do this? Do I just need to put multiple meshes in my baker hi poly and then the single merged mesh into my lo poly? 

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