If you zoom in further, does it still appear misaligned? If so, I think it's your vertices that are the problem, they must be slightly out of line. If they shimmer in and out of alignment, it could be a display issue. I'd bet on it being the vertices themselves.
Ok the question is how to i bring them in alignment with the rest of the verts? as i have no clue how to align the pivot to the correct angle and i cant figure i out or the life of me. if i rotate the object around so it is vertical using the rotate tool and J the perfectly line up even zoomed in really far. Here is a a…