http://www.youtube.com/watch?v=OPQ4qsmxyxY"]Mega Man Maverick Hunter X - 017 - Storm Eagle - YouTube[/ame]
http://www.youtube.com/watch?v=9tbqn8bV_EM"]Mega Man Maverick Hunter X - 012 - Chill Penguin - YouTube[/ame]
http://www.youtube.com/watch?v=B1LnANKg9GY"]resident evil 1, 2, 3, 4 and 5 - save room - YouTube[/ame]
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FL studio gets a bad wrap because its generally easy to use (so alot of noobs get ahold of it and make sub-par music) but if you know what you're doing it works great.
Pro Tools is not great for composition, but decent for sound editing. It's a non-destructive workflow, so that's a plus.
The out-of-the-box instruments that most of these come with are usually poor and limited. You'd need to look into 3rd party synthesizers or sound libraries to get better and more versatile sound.
http://www.kvraudio.com/ - This place will get you started on some good VSTi's and VST effects.
Maybe look into the Komplete packs by NI, i've used them and they are great.
http://www.gameaudioforum.com/phpBB3/ A more appropriate forum for these kinds of questions, good dudes, a lot of big composers hang out there.