SPEEDTREE Branch/Leaf Atlas Question

polycounter lvl 4
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hmm_rock polycounter lvl 4
I'm using Speedtrees leaf map maker to create branches with leaves to be baked down to a plane, but I can only generate one branch/ perspective at a time and each shot is baked on a separate plane leaving me with 3 image files for each branch (color, normal, spec). Is there a way to make an atlas of *all* the branches and their respective maps together without having to hand stitch them together in photoshop?

Thanks for any advice!!
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